Regier, J.C., Shultz, J.W., Zwick, A., Hussey, A., Ball, B., Wetzer, R., Martin, J.W., and Cunningham, C.W. 2010. Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences. Nature 463: 1079-1083.

Regier, J.C., Zwick, A., Cummings, M., Kawahara, A.Y., Cho, S., Weller, S., Roe, A., Baixeras-Almela, J.,, Brown, J.W., Parr, C., Davis, D.R., Epstein, M., Hallwachs, W., Hausmann, A., Janzen, D.H., Kitching, I.J., Solis, M.A., Yen, S.-H., Bazinet, A., and Mitter, C. 2009. On reconstructing the hyper-diverse radiation of advanced moths and butterflies (Lepidoptera: Ditrysia): Initial evidence from 123 species, 55 families and 5 protein-coding nuclear genes. BMC Evolutionary Biology 9: 280.

Regier, J.C., Shultz, J.W., Ganley, A.R.D., Hussey, A., Shi, D., Ball, B., Stajich, J.E., Cummings, M.P., Martin, J.W., and Cunningham, C.W. 2008. Resolving arthropod phylogeny: Exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Systematic Biology 57: 920-938.

Regier, J.C., Cook, C.P., Mitter, C., and Hussey, A. 2008. A phylogenetic study of the 'bombycoid complex' (Lepidoptera) using five protein-coding nuclear genes, with comments on the problem of macrolepidopteran phylogeny. Systematic Entomology 33: 175-189.

Regier, J.C., Grant, M.C., Mitter, C., Cook, C.P., Peigler, R.S., and Rougerie, R. 2008. Phylogenetic relationships of wild silkmoths (Lepidoptera: Saturniidae) inferred from four protein-coding nuclear genes. Systematic Entomology. 33: 219-228.

Regier, J.C., Paukstadt, U., Paukstadt, L.H., Mitter, C., and Peigler, R.S. 2005. Phylogenetics of eggshell morphogenesis in Antheraea (Lepidoptera: Saturniidae): Unique origin and repeated reduction of the aeropyle crown. Systematic Biology 54: 254-267.