Research OverviewMass Spectrometry Mass spectrometry is a technique that is used to deduce the structure and identity of molecules. The method relies on measuring the mass-to-charge ratio of ions, followed by analysis of the pattern by chemists who are able to deduce the arrangement of atoms and covalent bonds from that pattern. Proteomic Analysis Proteomic analysis refers to large-scale analysis of proteins, with special emphasis on protein structure and biological function. Secreted Mucus Mucus is a slippery substance secreted by a variety of tissues, and has complex composition and biological functions. It includes components involved in defense against foreign substances, such as enzymes that dissolve bacterial walls such as lysozyme, as well as antibody molecules... Complete Information... | Research DescriptionResearch Area: Genomics and Proteomics Research Specialty: Mucosal Proteomics The lab is focused on the development of new mass spectrometry-based quantitative techniques which can be applied to problems of medical significance. The scientific interests include proteomic analysis of secreted mucus. It has been hypothesized that mucus layer binds cytokines, growth factors, differentiation factors, mediators of inflammation and anti-bacterial and anti-viral peptides. Mucus layer with captured biologically active molecules might regulate the ability of immune, inflammatory and stroma cells to interact with cancer cells, might also incite inflammatory, repair or healing processes. Cancer cells, especially adenocarcinomas, express aberrant forms and amounts of mucins. The expression of distinct oligosaccharide structures confers on tumor cells an enormous range of potential ligands for interaction. Captured proteins might regulate growth properties of the tumor. Novel combinations and forms of mucins contribute to the survival of tumor cells and promote invasion and metastasis. Captured proteins might regulate the ability of immune, inflammatory and stromal cells to interact with the tumor. Although we currently focused on a group of antimicrobial peptides called defensins, it is just beginning to unravel other functional aspects of the mucus layer using quantitative proteomics. |
Representative Publications Turko, I. V. and Sechi S.: Acrylamide - A Cysteine Alkylating Reagent for Quantitative Proteomics (2006) Methods Mol. Biol., in press. Thompson, L., Turko, I. V., and Murad, F.: Mass spectrometry-based relative quantification of human neutrophil peptides 1, 2, and 3 from biological samples (2006) Mol. Immunol. 43, 1485-1489. Turko, I. V., and Murad, F.: Mapping sites of tyrosine nitration by matrix-assisted laser desorption/ionization mass spectrometry (2005) Methods Enzymol. 396, 266-275. Complete Listing...
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