Ridge KD, J. P. Marino, T. Ngo, E. Ramon, D. M. Brabazon, and N. G. Abdulaev (2006) NMR Analysis of Rhodopsin-Transducin Interactions. Journal of Vision Research, in press.

Ridge KD, Abdulaev NG, Zhang C, Ngo T, Brabazon DM, Marino JP. (2006) Conformational changes associated with receptor stimulated guanine nucleotide exchange in a heterotrimeric G-protein alpha -subunit: NMR analysis of GTP?S-bound states. J. Biol. Chem. 2006 Jan 9; [Epub ahead of print]

Dash C, Marino JP, Le Grice SF. (2006) Examining Ty3 polypurine tract structure and function by nucleoside analog interference J. Biol. Chem., 281(5):2773-83. Epub 2005 Nov 22.

Yi-Brunozzi HY, Brabazon DM, Lener D, Le Grice SF, Marino JP. (2005) A ribose sugar conformational switch in the LTR-retrotransposon Ty3 polypurine tract-containing RNA/DNA hybrid. J Am Chem Soc. 127(47):16344-5.

Abdulaev NG, Ngo T, Zhang C, Dinh A, Brabazon DM, Ridge KD, Marino JP. (2005) Heterotrimeric G-protein ?-subunit adopts a "preactivated" conformation when associated with ??-subunits. J. Biol. Chem., 280(45):38071-80. Epub 2005 Aug 29.

Abdulaev NG, Zhang C, Dinh A, Ngo T, Bryan PN, Brabazon DM, Marino JP, Ridge KD. (2005) Bacterial expression and one-step purification of an isotope-labeled heterotrimeric G-protein ?-subunit, J. Biomol. NMR, 32(1):31-40.

P.B. Yim, X. Zhang, E. S. DeJong, J. M. Carroll, J.P. Marino and L.S. Goldner (2005) Single RNA Kissing Complexes Studied by Fluorescence Resonance Energy Transfer, Proc. Intl. Soc. Opt. Eng., 5699, 450.

T. D. Bradrick and J.P. Marino (2004) Ligand-induced changes in 2-aminopurine fluorescence as a probe for small molecule binding to HIV-1 TAR RNA, RNA, 10, 1459-1468.

J. Furrer, F. J. Kramer, J. P. Marino, S.J. Glaser and B. Luy (2004) Homonuclear Hartmann-Hann transfer with reduced relaxation losses by use of MOCCA-XY16 multiple pulse sequence, J. Magn. Reson., 166, 39-46.

M.R. Mihailescu and J. P. Marino (2004) A proton-coupled dynamic conformational switch in the HIV-1 dimerization initiation site kissing complex, Proc. Natl. Acad. Sci., USA., 101(5), 1189-1194.

D. M. Brabazon, N. G. Abdulaev, J. P. Marino, and K. D. Ridge (2003) Evidence for Structural Changes in Carboxyl-terminal Peptides of Transducin ??-subunit upon binding a Soluble Mimic of Light-activated Rhodopsin, Biochemistry 42(2), 302-311.

B. Luy and J. P. Marino (2003) JE-TROSY: combined J- and TROSY-spectroscopy for the Measurement of One-bond Couplings in Macromolecules, J. Magn. Reson. 163, 92-98.

E. S. DeJong, C. Chang, M. K. Gilson and J. P. Marino (2003) Proflavine Acts as a Rev Inhibitor by Targeting the High-Affinity Rev Binding Site of the Rev-Responsive Element of HIV-1, Biochemistry 42(26), 8035-8046.

B. Luy, U. Richter, E. S. DeJong, O. W. Srensen and J. P. Marino (2002) Observation of H-bond Mediated ^3hJ_H2H3 Couplings across Watson-Crick AU Base Pairs in RNA, J. Biomol. NMR 24, 133-142.

M. J. Rist and J. P. Marino (2002) Mechanism of Nucleocapsid Protein Catalyzed Structural Isomerization of the Dimerization Initiation Site of HIV-1, Biochemistry 41(50), 14762-14770.

E.S. DeJong, B. Luy & J.P. Marino (2002) RNA and RNA-Protein Complexes as Targets for Therapeutic Intervention, Curr. Top. Med. Chem. 2, 289-302.

M.J. Rist & J.P. Marino (2002) Fluorescent Nucleotide Base Analogs as Probes of Nucleic Acid Structure, Dynamics and Interactions, Curr. Org. Chem. 6, 775-793.

Luy, B. & Marino, J.P. (2001) 1H-31P CPMG-Correlated Experiments for the Assignment of Nucleic Acids. J. Am. Chem. Soc. 123(45), 11306-11307.

Luy, B. & Marino, J.P. (2001) S³E-E.COSY Methods for the Measurement of J_HF and J_HH Coupling Constants. J. Magn. Reson. 152, 179-184.

Luy, B. & Marino, J.P. (2001) Measurement and Application of 1H-19F Dipolar Couplings in the Structure Determination of 2'-Fluorolabeled RNA. J. Biomol. NMR 20, 39-47.

Goldner, L. S., K. D. Weston, W. F. Heinz, J. Hwang, E. S. DeJong and J. P. Marino (2001) Single Molecule Probes, Proc. Intl. Soc. Opt. Eng, 4450, 70-80.

Rist, M.J. & Marino, J.P. (2001) Quantitative Analysis of an Antisense RNA Loop-Loop Complex using 2-Aminopurine Fluorescence. Nucl. Acids. Res. 29(11), 2401-2408.

Lacourciere, K.A., Stivers, J. T., and Marino, J. P. (2000) Mechanism of Neomycin and Rev Peptide Binding to the Rev Responsive Element of HIV-1 as Determined by Fluorescence and NMR Spectroscopy. Biochemistry 39(19), 5630-5641.

Luy, B. & Marino, J.P. (2000) Direct evidence for Watson-Crick Base-pairs in a Dynamic Region of RNA Structure. J. Am. Chem. Soc. 122(33), 8095-8096.

Mapping protein binding sites on seven-helical integral membrane receptors through expression of soluble interacting domains and NMR spectroscopy (1999) Ridge KD, Abdulaev NG, Ngo T, Brabazon DM, Marino JP FASEB J. 13(7): A1405-A1405, Suppl.

Mapping protein binding sites on visual rhodopsin through expression of soluble interacting domains and NMR spectroscopy (1999) Ridge KD, Abdulaev NG, Ngo T, Brabazon DM, Marino JP, Photochemistry and Photobiology, 69: 45S-45S.

Solution NMR investigation of the loop regions of rhodopsin expressed as a fusion with thioredoxin (1999) Brabazon DM, Abdulaev NG, Ridge KD, Marino JP Biophysical Journal, 76(1): A247-A247.

J-coupling restraints in RNA structure determination (1999) Marino JP, Schwalbe H, Griesinger C Accounts of Chemical Research, 32(7): 614-623.

Methods for the Determination of Torsion Angle Constraints in Biomacromolecules (1999) C. Griesinger, M. Hennig, J.P. Marino, B. Reif, H. Schwalbe Biological Magnetic Resonance, Vol. 16: Modern Techniques in Protein NMR, Edited by L. Berliner and R. Krishna, Kluwer Academic/Plenum Press, Chapter 7, 259-367.

A new experiment for the measurement of (n)J(C,P) coupling constants including (3)J(C4(i)('),P-i) and (3)J(C4(i)('),Pi+1) in oligonucleotides (1998) Richter C, Reif B, Warner K, Quant S, Marino JP, Engels JW, Griesinger C,Schwalbe H, Journal of Biomolecular NMR, 12(2): 223-230

Multiple-quantum coherence dramatically enhances the sensitivity of CH and CH2 correlations in uniformly C-13-labeled RNA (1997) Marino JP, Diener JL, Moore PB, Griesinger C Journal of the American Chemical Society, 119(31): 7361-7366.

Determination of homo- and heteronuclear coupling constants in uniformly C-13,N-15-labeled DNA oligonucleotides (1996) Zimmer DP, Marino JP, Griesinger C, Magnetic Resonance in Chemistry, 34: S177-S186.

Directed TOCSY, A method for selection of directed correlations by optimal combinations of isotropic and longitudinal mixing (1996) Glaser SJ, Schwalbe H, Marino JP, Griesinger C, Journal of Magnetic Resonance B, 112(2):160-80.

Determination of gamma and stereospecific assignment of H5' protons by measurement of (2)J and (3)J coupling constants in uniformly C-13 labeled RNA (1996) Marino JP, Schwalbe H, Glaser SJ, Griesinger C, Journal of the American Chemical Society, 118(18): 4388-4395.

Measurement of H,H-Coupling Constants Associated with nu1, nu2, and nu3 in Uniformly C-13-Labeled RNA by HCC-TOCSY-CCH E.COSY (1995) Schwalbe H, Marino JP, Glaser SJ, Griesinger C, Journal of the American Chemical Society, 117(27): 7251-7252.

Bent Helix Formation Between RNA Hairpins with Complementary Loops (1995) J.P. Marino, R.S. Gregorian Jr., G. Csankovzki and D.M. Crothers, Science, 268(5216): 1448-1454.

New experiments directed to the assignment and measurement of coupling constants in proteins and oligonucleotides (1995) Griesinger C, Schwalbe H, Marino JP, Rexroth A, Maurer M, Bellinger V, Schmidt P, Quant S, Wechselberger R, Reif B, NaumannT, Bermel W, Anklin C, Glaser SJ, King G, Crothers DM, Journal of Cellular Biology, 17, Suppl. 21B.

Multi-Dimensional Heteronuclear NMR Structural Studies of RNA Oligonucleotides in Solution: (i) New Methods for Through-Bond Assignment and Characterization of Backbone Resonances (ii) Structural Characterization of Complexes formed between RNA Hairpins with Complementary Loops (1995) J.P. Marino, Ph.D. Thesis.

Sequential correlation of anomeric ribose protons and intervening phophorus in RNA oligonucleotides by a H-1,C-13,P-31 triple resonance experiment: HCP-CCH-TOCSY (1995) Marino JP, Schwalbe H, Anklin C, Bermel W, Crothers DM, Griesinger C, Journal of Biomolecular NMR, 5(1): 87-92.

Dependence of C-13 Chemical Shift on Glycosidic Torsional Angles in Ribonucleic Acids (1994) Ghose R., Marino JP, Wiberg KB, Prestegard JH, Journal of the American Chemical Society, 116(19): 8827-8828.

A Three-Dimensional Triple Resonance H-1,C-13, P-31 Experiment: Sequential Through-Bond Correlation of Ribose Protons and Intervening Phosphorus Along the RNA Oligonucleotide Backbone (1994) Marino JP, Schwalbe H, Anklin C., Bermel W, Crothers DM, Griesinger C, J. Am. Chem. Soc, 116(14) : 6472-6473.

Determination of a Complete Set of Coupling Constants in C13-Labeled Oligonucleotides (1994) Schwalbe H, Marino JP, King GC, Wechselberger R, Bermel W, Griesinger C, Journal of Biomolecular NMR, 4(5): 631-644.

Correlation of Adenine H2/H8 Resonances in Uniformly C-13 Labeled RNAs by 2D HCCH-TOCSY: A New Tool for H-1 Assignment (1994) J.P. Marino, J.H. Prestegard, D.M. Crothers, J. Am. Chem. Soc, 116: 2205-2206.

EPR, Magnetic Susceptibility and ENDOR Studies of the Water Oxidizing Complex and Dimanganese Models: Consequences of Cl- Exchange and Ca+2 Depletion (1990) M. Baumgarten, J. Tso, J.P. Marino, M. Sivaraja, C.P. Lin, G.C. Dismukes, Cur. Res. Photosyn., 1: 953-956.